RnoALTA0007874-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000024008 | Cdc25c
Description
cell division cycle 25C [Source:RGD Symbol;Acc:1311875]
Coordinates
chr18:27540212-27541532:-
Coord C1 exon
chr18:27541434-27541532
Coord A exon
chr18:27540362-27540373
Coord C2 exon
chr18:27540212-27540361
Length
12 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
CTGGGCTTTAATCTTGTCAGTAT
3' ss Score
3.76
Exon sequences
Seq C1 exon
ATAAACACCAGTTTTAAAACATTGGAATGGGAGGCACCTAGGACCCCGAGGCTTCAAAAAAAGCCTGGCGATCCTCTGGCTTCTCCTCTCTGTGAGCTG
Seq A exon
TATACTTGACAG
Seq C2 exon
GAAAATGGAATCTTGCTGGAAAGTGAAATGAAGAATCTGGGCAGTCCCATTACTACAGTTCCAAAACTGAGTAAAAATCTCAAGCTAGAAGACCAAGAAGGGATTTCAGAAGACCCAATGGAGTGTTCCCTGGAAGACCAAGATGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024008-8-10,8-9-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.788 A=NA C2=0.570
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=FE(18.5=100)
A:
NA
C2:
PF066178=M-inducer_phosp=FE(28.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAAGCCTGGCGATCCTCTG
R:
GGAACTGTAGTAATGGGACTGCC
Band lengths:
104-116
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]