MmuALTA0003651-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000044201 | Cdc25c
Description
cell division cycle 25C [Source:MGI Symbol;Acc:MGI:88350]
Coordinates
chr18:34743938-34744969:-
Coord C1 exon
chr18:34744871-34744969
Coord A exon
chr18:34744064-34744075
Coord C2 exon
chr18:34743938-34744063
Length
12 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
ATAGGTTTTAATCTTGTCAGTAT
3' ss Score
1.89
Exon sequences
Seq C1 exon
ATAAACACCAGTTTAAAGGCATTGGAATGGGAGGCACCTAGGACCCCAAGGTTTCGAAAAATGCCTGGAGGTCCTCTGACTTCTCCTCTGTGTGAGCTG
Seq A exon
TATACTTGACAG
Seq C2 exon
GAAATGAAGCATCTGGGCAGTCCCATTACTACGGTTCCTAAGCTGAGTCAAAATGTAAAGCTAGAAGACCAAGAAAGGATTTCAGAAGACCCAATGGAGTGTTCCCTGGGAGACCAGGACGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044201-9-17,9-16-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.909 A=NA C2=0.619
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=FE(19.8=100)
A:
NA
C2:
PF066178=M-inducer_phosp=FE(25.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGGCATTGGAATGGGAGGC
R:
GGACTGCCCAGATGCTTCATT
Band lengths:
108-120
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types