MmuALTA0003651-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000044201 | Cdc25c
Description
cell division cycle 25 homolog C (S. pombe) [Source:MGI Symbol;Acc:MGI:88350]
Coordinates
chr18:34903592-34904623:-
Coord C1 exon
chr18:34904525-34904623
Coord A exon
chr18:34903718-34903729
Coord C2 exon
chr18:34903592-34903717
Length
12 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
ATAGGTTTTAATCTTGTCAGTAT
3' ss Score
1.89
Exon sequences
Seq C1 exon
ATAAACACCAGTTTAAAGGCATTGGAATGGGAGGCACCTAGGACCCCAAGGTTTCGAAAAATGCCTGGAGGTCCTCTGACTTCTCCTCTGTGTGAGCTG
Seq A exon
TATACTTGACAG
Seq C2 exon
GAAATGAAGCATCTGGGCAGTCCCATTACTACGGTTCCTAAGCTGAGTCAAAATGTAAAGCTAGAAGACCAAGAAAGGATTTCAGAAGACCCAATGGAGTGTTCCCTGGGAGACCAGGACGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044201-8-14,8-13-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.909 A=NA C2=0.619
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=FE(19.8=100)
A:
NA
C2:
PF066178=M-inducer_phosp=FE(25.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGGCATTGGAATGGGAGGC
R:
GGACTGCCCAGATGCTTCATT
Band lengths:
108-120
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: