MmuEX0010363 @ mm9
Exon Skipping
Gene
ENSMUSG00000044201 | Cdc25c
Description
cell division cycle 25 homolog C (S. pombe) [Source:MGI Symbol;Acc:MGI:88350]
Coordinates
chr18:34899982-34906967:-
Coord C1 exon
chr18:34906878-34906967
Coord A exon
chr18:34904525-34904623
Coord C2 exon
chr18:34899982-34900083
Length
99 bp
Sequences
Splice sites
3' ss Seq
CGCGGGTCCTTCTTGTGCAGATA
3' ss Score
8.94
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GTACAGCTTCTTTGTAGTACTCCGAATGCTATGAATCATGGCCACAGAAAGAAGATTGCAAAGCGTAGCACATCTGCACATAAAGAAAAT
Seq A exon
ATAAACACCAGTTTAAAGGCATTGGAATGGGAGGCACCTAGGACCCCAAGGTTTCGAAAAATGCCTGGAGGTCCTCTGACTTCTCCTCTGTGTGAGCTG
Seq C2 exon
GGCTTAAGTCTAAGGAAGATGGTCCCACTCTGTGACATGAACGCCATTCAGATGGAGGAGGAAGAGTCTGGCTCAGAGCTTCTGATTGGTGATTTCTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044201_MULTIEX1-1/3=C1-3
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.767 A=0.909 C2=0.000
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=FE(17.9=100)
A:
PF066178=M-inducer_phosp=FE(19.8=100)
C2:
PF066178=M-inducer_phosp=PD(10.5=50.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCTTCTTTGTAGTACTCCGA
R:
GCTCTGAGCCAGACTCTTCCT
Band lengths:
167-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: