MmuEX0010362 @ mm9
Exon Skipping
Gene
ENSMUSG00000044201 | Cdc25c
Description
cell division cycle 25 homolog C (S. pombe) [Source:MGI Symbol;Acc:MGI:88350]
Coordinates
chr18:34904525-34907297:-
Coord C1 exon
chr18:34907264-34907297
Coord A exon
chr18:34906878-34906967
Coord C2 exon
chr18:34904525-34904623
Length
90 bp
Sequences
Splice sites
3' ss Seq
TAGACATGTCTGTCTTTTAGGTA
3' ss Score
9.22
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
GGATTTTCACCAGGACCTTATGAAAGGTATCCCA
Seq A exon
GTACAGCTTCTTTGTAGTACTCCGAATGCTATGAATCATGGCCACAGAAAGAAGATTGCAAAGCGTAGCACATCTGCACATAAAGAAAAT
Seq C2 exon
ATAAACACCAGTTTAAAGGCATTGGAATGGGAGGCACCTAGGACCCCAAGGTTTCGAAAAATGCCTGGAGGTCCTCTGACTTCTCCTCTGTGTGAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044201-'6-12,'6-9,7-12
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.417 A=0.767 C2=0.909
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=FE(6.8=100)
A:
PF066178=M-inducer_phosp=FE(17.9=100)
C2:
PF066178=M-inducer_phosp=FE(19.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATTTTCACCAGGACCTTATGA
R:
AGCTCACACAGAGGAGAAGTCA
Band lengths:
132-222
Functional annotations
There are 1 annotated functions for this event
PMID: 11842186
Partially encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: competition binding, mutation analysis. ELM ID: ELMI001012; ELM sequence: NKEND; Overlap: PARTIAL_RIGHT
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: