RnoEX0018925 @ rn6
Exon Skipping
Gene
ENSRNOG00000024008 | Cdc25c
Description
cell division cycle 25C [Source:RGD Symbol;Acc:1311875]
Coordinates
chr18:27541434-27544214:-
Coord C1 exon
chr18:27544181-27544214
Coord A exon
chr18:27543853-27543942
Coord C2 exon
chr18:27541434-27541532
Length
90 bp
Sequences
Splice sites
3' ss Seq
CTGTAGACAATGTCTTCTAGGCA
3' ss Score
3.14
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
GGATTTTCACCAGGACCTTATGAAAGGCATCCCA
Seq A exon
GCACAGCTTCTCTGTAGTACTCCAAATGCTTTGGATCATGGCCACAGAAGGAAGGATGCAAAGTGTAGCACATCTGCAAATAAAGAAAAT
Seq C2 exon
ATAAACACCAGTTTTAAAACATTGGAATGGGAGGCACCTAGGACCCCGAGGCTTCAAAAAAAGCCTGGCGATCCTCTGGCTTCTCCTCTCTGTGAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024008-'6-8,'6-7,7-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.600 C2=0.788
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=FE(6.4=100)
A:
PF066178=M-inducer_phosp=FE(16.8=100)
C2:
PF066178=M-inducer_phosp=FE(18.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATTTTCACCAGGACCTTATGA
R:
AGCTCACAGAGAGGAGAAGCC
Band lengths:
132-222
Functional annotations
There are 1 annotated functions for this event
PMID: 11842186
Partially encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: competition binding, mutation analysis. ELM ID: ELMI001012; ELM sequence: NKEND; Overlap: PARTIAL_RIGHT
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]