BtaEX6040697 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005293 | CDC25C
Description
Bos taurus cell division cycle 25 homolog C (S. pombe) (CDC25C), mRNA. [Source:RefSeq mRNA;Acc:NM_001097996]
Coordinates
chr7:51335333-51339879:-
Coord C1 exon
chr7:51339846-51339879
Coord A exon
chr7:51339618-51339707
Coord C2 exon
chr7:51335333-51335491
Length
90 bp
Sequences
Splice sites
3' ss Seq
TTGAAAACAATCTCTTGTAGGCA
3' ss Score
5.28
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
GAATTACCGCCAACATCTTATAAAATGTAGCCCA
Seq A exon
GCACAGCTGTTTTGTAGCACTCCGAATGCCTTGGAGCATGGCCGCAGGAAGAAAGATGCAATATGTGGCTCATCTGCAAATAAGGAAAAT
Seq C2 exon
GACAATGGAAACTTGGTGGAAAATGAAATGAAACATCTGGGCAGTCCCATTACTACAGTTTCAAAATTACATAAAAATCCAGAGCTAGCAGAAGATCAGGCAGAAGAGATATCAGATGAATTGATGGAGTTTTCACTGGAAGATCAAGAAAAGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005293-'11-11,'11-6,12-11=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.600 C2=0.925
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=FE(15.5=100)
A:
PF066178=M-inducer_phosp=FE(40.8=100)
C2:
PF066178=M-inducer_phosp=PD(5.6=7.5),PF066178=M-inducer_phosp=PU(42.6=98.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCAACATCTTATAAAATGTAGCCC
R:
GGCCTTTTCTTGATCTTCCAGTGA
Band lengths:
183-273
Functional annotations
There are 1 annotated functions for this event
PMID: 11842186
Partially encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: competition binding, mutation analysis. ELM ID: ELMI001012; ELM sequence: NKEND; Overlap: PARTIAL_RIGHT
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]