RnoALTA0007927-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000009675 | Cdc42bpb
Description
CDC42 binding protein kinase beta [Source:RGD Symbol;Acc:621753]
Coordinates
chr6:135790445-135795246:-
Coord C1 exon
chr6:135795163-135795246
Coord A exon
chr6:135790537-135790540
Coord C2 exon
chr6:135790445-135790536
Length
4 bp
Sequences
Splice sites
5' ss Seq
GAGGTGTGT
5' ss Score
6.14
3' ss Seq
TGTCCTCTCGTTCCTCACAGACA
3' ss Score
11.89
Exon sequences
Seq C1 exon
GTTGCTGTTGTCAAAATGAAGAACACTGAACGAATTTATGCAATGAAAATTCTCAACAAATGGGAGATGCTAAAGAGAGCAGAG
Seq A exon
ACAG
Seq C2 exon
CTTGCTTTCGAGAAGAGAGGGATGTGCTGGTGAACGGTGACTGCCAGTGGATCACTGCGCTACACTACGCCTTTCAAGATGAGAACTACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009675-6-5,6-4-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(10.1=100)
A:
NA
C2:
PF0006920=Pkinase=FE(11.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCAACAAATGGGAGATGCT
R:
CGTAGTGTAGCGCAGTGATCC
Band lengths:
103-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]