GgaALTA1007785-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000011432 | CDC42BPB
Description
CDC42 binding protein kinase beta (DMPK-like) [Source:HGNC Symbol;Acc:HGNC:1738]
Coordinates
chr5:49859805-49863438:-
Coord C1 exon
chr5:49863355-49863438
Coord A exon
chr5:49859897-49859900
Coord C2 exon
chr5:49859805-49859896
Length
4 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
TTTCCCTTCACTTCCTTCAGACA
3' ss Score
9.72
Exon sequences
Seq C1 exon
GTTGCAGTTGTTAAAATGAAGTGTACAGAGCGCATTTATGCAATGAAAATTCTAAACAAATGGGAAATGCTCAAAAGGGCAGAG
Seq A exon
ACAG
Seq C2 exon
CTTGTTTCCGAGAAGAGAGAAATGTCTTGGTGAATGGAGATTGCCAGTGGATTACTACATTGCACTATGCCTTTCAAGATGAGAACTATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011432-3-8,3-7-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(10.1=100)
A:
NA
C2:
PF0006920=Pkinase=FE(11.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGAAATGCTCAAAAGGGCA
R:
TCTCATCTTGAAAGGCATAGTGC
Band lengths:
108-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]