MmuALTA0003673-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000021279 | Cdc42bpb
Description
CDC42 binding protein kinase beta [Source:MGI Symbol;Acc:MGI:2136459]
Coordinates
chr12:112578032-112580320:-
Coord C1 exon
chr12:112580237-112580320
Coord A exon
chr12:112578124-112578127
Coord C2 exon
chr12:112578032-112578123
Length
4 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGT
5' ss Score
9.81
3' ss Seq
TGTCCTCTCGTTCCTCACAGACA
3' ss Score
11.89
Exon sequences
Seq C1 exon
GTTGCTGTTGTCAAAATGAAGAACACTGAACGAATTTATGCAATGAAAATTCTCAACAAATGGGAAATGCTAAAGAGAGCAGAG
Seq A exon
ACAG
Seq C2 exon
CTTGCTTTCGAGAAGAGCGTGACGTGCTGGTGAACGGCGACTGCCAGTGGATCACGGCTCTGCACTATGCCTTTCAGGATGAGAACTACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021279-2-3,2-2-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(10.1=100)
A:
NA
C2:
PF0006920=Pkinase=FE(11.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGTTGTCAAAATGAAGAACACT
R:
GTCACGCTCTTCTCGAAAGCA
Band lengths:
105-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: