DreALTA0007267-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000104283 | cdc42bpaa
Description
CDC42 binding protein kinase alpha (DMPK-like) a [Source:ZFIN;Acc:ZDB-GENE-120727-12]
Coordinates
chr17:8209307-8209889:+
Coord C1 exon
chr17:8209307-8209390
Coord A exon
chr17:8209794-8209797
Coord C2 exon
chr17:8209798-8209889
Length
4 bp
Sequences
Splice sites
5' ss Seq
GAGGTACAT
5' ss Score
6.75
3' ss Seq
ATCTTTTTTTTCCTCTCCAGACA
3' ss Score
10.77
Exon sequences
Seq C1 exon
GTAGCAGTTGTAAAGGTGAAAAGTTCAGACAAGGTGTTTGCCATGAAGATCCTCAACAAGTGGGAGATGCTGAAACGAGCAGAG
Seq A exon
ACAG
Seq C2 exon
CATGTTTTCGGGAGGAACGGGATGTGCTGGTGAACGGGGACAGTCAGTGGATCACCACACTACACTACGCTTTTCAGGATGACAACTTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104283-2-3,2-2-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(17.4=100)
A:
NA
C2:
PF0006920=Pkinase=FE(20.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCAACAAGTGGGAGATGC
R:
TGGTGATCCACTGACTGTCCC
Band lengths:
92-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]