RnoALTA0007916-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000002841 | Cdc42bpa
Description
CDC42 binding protein kinase alpha [Source:RGD Symbol;Acc:621406]
Coordinates
chr13:98311826-98315929:+
Coord C1 exon
chr13:98311826-98311909
Coord A exon
chr13:98315834-98315837
Coord C2 exon
chr13:98315838-98315929
Length
4 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
ACATTTTCTTTCCCTTCCAGACA
3' ss Score
11.66
Exon sequences
Seq C1 exon
GTTGCTGTAGTTAAACTGAAAAATGCAGATAAAGTATTTGCCATGAAAATTCTGAACAAGTGGGAAATGCTGAAAAGAGCTGAG
Seq A exon
ACAG
Seq C2 exon
CGTGCTTTCGTGAAGAGAGGGATGTGTTGGTAAATGGAGACAGTAAGTGGATAACCACTCTGCACTATGCTTTTCAGGATGACAATAACTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002841-8-7,8-6-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(10.1=100)
A:
NA
C2:
PF0006920=Pkinase=FE(11.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGGAAATGCTGAAAAGAGCT
R:
GCATAGTGCAGAGTGGTTATCCA
Band lengths:
96-100
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]