GgaALTA1007780-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000009158 | CDC42BPA
Description
serine/threonine-protein kinase MRCK alpha [Source:RefSeq peptide;Acc:NP_001186372]
Coordinates
chr3:11686642-11690547:+
Coord C1 exon
chr3:11686642-11686725
Coord A exon
chr3:11690452-11690455
Coord C2 exon
chr3:11690456-11690547
Length
4 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGA
5' ss Score
6.42
3' ss Seq
TTATTTTTTTCCCCCTTCAGACA
3' ss Score
10.64
Exon sequences
Seq C1 exon
GTTGCAGTAGTAAAACTGAAGAATGCAGATAAGGTTTTTGCCATGAAGATACTTAATAAGTGGGAGATGCTGAAGAGAGCTGAA
Seq A exon
ACAG
Seq C2 exon
CATGTTTTCGAGAAGAGAGAGATGTGTTAGTGAATGGAGATAACCAGTGGATCACAACATTACATTACGCGTTCCAGGATGAAAACTATTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009158-8-8,8-7-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(10.1=100)
A:
NA
C2:
PF0006920=Pkinase=FE(11.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGAGATGCTGAAGAGAGCT
R:
TCATCCTGGAACGCGTAATGT
Band lengths:
106-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]