HsaALTA1032493-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000143776 | CDC42BPA
Description
CDC42 binding protein kinase alpha [Source:HGNC Symbol;Acc:HGNC:1737]
Coordinates
chr1:227199557-227213219:-
Coord C1 exon
chr1:227213136-227213219
Coord A exon
chr1:227199649-227199652
Coord C2 exon
chr1:227199557-227199648
Length
4 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
ATTTTCTTTTTGTGTTTCAGACA
3' ss Score
11.08
Exon sequences
Seq C1 exon
GTTGCTGTAGTAAAACTAAAAAATGCAGATAAAGTGTTTGCCATGAAAATATTGAATAAATGGGAAATGCTGAAAAGAGCTGAG
Seq A exon
ACAG
Seq C2 exon
CATGTTTTCGTGAAGAAAGGGATGTATTAGTGAATGGAGACAATAAATGGATTACAACCTTGCACTATGCTTTCCAGGATGACAATAACTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143776-8-15,8-14-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(10.1=100)
A:
NA
C2:
PF0006920=Pkinase=FE(11.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGAAATGCTGAAAAGAGCTGA
R:
TGTCATCCTGGAAAGCATAGTGC
Band lengths:
108-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains