RnoALTA0009036-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000001143 | Cit
Description
citron rho-interacting serine/threonine kinase [Source:RGD Symbol;Acc:70878]
Coordinates
chr12:46370847-46371881:-
Coord C1 exon
chr12:46371684-46371881
Coord A exon
chr12:46371041-46371067
Coord C2 exon
chr12:46370847-46371040
Length
27 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
3' ss Seq
GAATCCCTGTTTGATACAAGGCG
3' ss Score
-0.03
Exon sequences
Seq C1 exon
GTCATCACCGACCTGGAGGAGCAGCTGAACCAGCTCACCGAGGACAACGCCGAGCTCAACAACCAAAACTTCTACCTGTCCAAACAACTCGATGAGGCTTCGGGTGCCAACGATGAGATTGTGCAGCTGCGAAGCGAGGTGGACCATCTCCGCCGTGAGATCACGGAGCGGGAGATGCAGCTCACCAGCCAGAAGCAA
Seq A exon
GCGTAACTCAGTGCTGCTGACTTGCAG
Seq C2 exon
ACAATGGAGGCTCTGAAGACGACCTGCACCATGCTGGAGGAGCAGGTCATGGACCTGGAGGCCCTGAACGACGAGCTGCTGGAGAAGGAGCGCCAGTGGGAGGCCTGGAGGAGCGTCCTCGGGGACGAGAAGTCTCAGTTTGAGTGTCGAGTTCGAGAGCTACAGAGGATGCTGGACACCGAGAAGCAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001143-51-39,51-38-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=0.185
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=PU(40.8=97.0)
A:
NA
C2:
PF0149614=V_ATPase_I=FE(40.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAGATTGTGCAGCTGCGAA
R:
CATGGTGCAGGTCGTCTTCAG
Band lengths:
119-146
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]