RnoALTA0009271-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000020500 | Clk2
Description
CDC-like kinase 2 [Source:RGD Symbol;Acc:1359711]
Coordinates
chr2:188491320-188492645:+
Coord C1 exon
chr2:188491320-188491440
Coord A exon
NA
Coord C2 exon
chr2:188492517-188492645
Length
0 bp
Sequences
Splice sites
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
3' ss Seq
CCTGGTTTTGTCCCTTACAGCTC
3' ss Score
11.23
Exon sequences
Seq C1 exon
GCTACAGCTGCAGCAGCCACCGCTGAGCTGCTGAAGAAGCAGGAGGAGCTCAACCGGAAGGCAGAGGAGTTGGACCGCAGGGAGCGAGAGCTGCAGCATGTTGCCCTGGGTGGTGCAGGCA
Seq A exon
NA
Seq C2 exon
CTCGACAGAACAACTGGCCTCCCCTGCCGTCTTTTTGCCCTGTGCAGCCTTGCTTTTTCCAAGACATCTCTATGGAGATCCCCCAAGAATTTCAGAAGACAGTGTCTACCATGTACTACCTCTGGATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020500-26-41,26-40-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.695 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF041448=SCAMP=PU(23.6=95.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCTGAGCTGCTGAAGAAG
R:
ACATCCAGAGGTAGTACATGGT
Band lengths:
231-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]