RnoALTA0009642-1/4 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000022015 | Cntrl
Description
centriolin [Source:RGD Symbol;Acc:1305317]
Coordinates
chr3:14357470-14361069:+
Coord C1 exon
chr3:14357470-14357687
Coord A exon
NA
Coord C2 exon
chr3:14360920-14361069
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
ACTCTGTGGTAGAGTTTTAGCAG
3' ss Score
-7.75
Exon sequences
Seq C1 exon
GGGAAGCTAGAGCTAGAGAGTTTGCAGCAGACAGCTCAGCAGCAGAGACGGGAGCTAGAGCGGCAGAGACAACTCCTGGAGAGAGACAGGCGGGAGACAGAGCGAGTGAGGGCTGAGACCCAGGCACTACAGTCCTGCATCGAATGTCTGAATAAAGAAAAGGAACATCTCCAAGAGCAGTGCGAGAGTTGGGAAAAGAAGTCTTCCCACGCCAAAAG
Seq A exon
NA
Seq C2 exon
CAGCTACCGAGGAAAGCAACAACACGGAGCAGTCCAAGCTGGGGCAGCTGGAAGTGAGCGTCAGGAAGCTGCAGCAGGAGCTGGAGCTCCTGAGCCAAGACAAGCTCGCCCTACACAGTGATAGCGCCCAGGAGCAACAGCAGCTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022015-47-66,47-65,47-64,47-63-1/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.260 A=NA C2=0.685
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACATCTCCAAGAGCAGTGCG
R:
CTTGGACTGCTCCGTGTTGTT
Band lengths:
93-99
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]