RnoALTA0009642-3/4 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000022015 | Cntrl
Description
centriolin [Source:RGD Symbol;Acc:1305317]
Coordinates
chr3:14357470-14361069:+
Coord C1 exon
chr3:14357470-14357687
Coord A exon
chr3:14360912-14360919
Coord C2 exon
chr3:14360920-14361069
Length
8 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
TCTGCTTTACTCTGTGGTAGAGT
3' ss Score
5.82
Exon sequences
Seq C1 exon
GGGAAGCTAGAGCTAGAGAGTTTGCAGCAGACAGCTCAGCAGCAGAGACGGGAGCTAGAGCGGCAGAGACAACTCCTGGAGAGAGACAGGCGGGAGACAGAGCGAGTGAGGGCTGAGACCCAGGCACTACAGTCCTGCATCGAATGTCTGAATAAAGAAAAGGAACATCTCCAAGAGCAGTGCGAGAGTTGGGAAAAGAAGTCTTCCCACGCCAAAAG
Seq A exon
AGTTTTAG
Seq C2 exon
CAGCTACCGAGGAAAGCAACAACACGGAGCAGTCCAAGCTGGGGCAGCTGGAAGTGAGCGTCAGGAAGCTGCAGCAGGAGCTGGAGCTCCTGAGCCAAGACAAGCTCGCCCTACACAGTGATAGCGCCCAGGAGCAACAGCAGCTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022015-47-66,47-65,47-64,47-63-3/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.260 A=NA C2=0.685
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACATCTCCAAGAGCAGTGCG
R:
CTTGGACTGCTCCGTGTTGTT
Band lengths:
93-101
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]