HsaALTA1019921-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000119397 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr9:121162054-121165100:+
Coord C1 exon
chr9:121162054-121162271
Coord A exon
chr9:121164943-121164950
Coord C2 exon
chr9:121164951-121165100
Length
8 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
TGACTTACTCTCTGTGGTAGGGT
3' ss Score
7.21
Exon sequences
Seq C1 exon
GAGAAACTGGAGTTAGAGAATTTGCAGCAGATATCCCAGCAGCAGAAAGGGGAAATAGAGTGGCAGAAGCAGCTCCTTGAGAGGGATAAACGAGAAATAGAACGAATGACTGCTGAGTCCCGAGCTTTACAATCGTGTGTTGAGTGTTTGAGCAAAGAAAAGGAAGATCTCCAAGAGAAATGTGACATTTGGGAAAAAAAGTTGGCACAAACCAAAAG
Seq A exon
GGTTTTAG
Seq C2 exon
CAGCAGCAGAAGAAAATAGCAAAATGGAGCAATCAAACTTAGAAAAGTTGGAATTGAATGTCAGAAAACTGCAGCAGGAACTAGACCAACTAAACAGAGACAAGTTGTCACTGCATAACGACATTTCAGCAATGCAACAGCAGCTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119397-72-83,72-82-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=NA C2=0.450
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTGTGTTGAGTGTTTGAGCA
R:
TTGCTATTTTCTTCTGCTGCTG
Band lengths:
108-116
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains