HsaEX0014658 @ hg38
Exon Skipping
Gene
ENSG00000119397 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr9:121160143-121165100:+
Coord C1 exon
chr9:121160143-121160302
Coord A exon
chr9:121162054-121162271
Coord C2 exon
chr9:121164943-121165100
Length
218 bp
Sequences
Splice sites
3' ss Seq
TCCTCTTTTATCTGATTTAGGAG
3' ss Score
9.94
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GAAGTAAAATCTCTTCTGGAAGAACTGAGTTTTCAGAAAGGAGAACTAAATGTTCAGATTAGTGAAAGAAAAACTCAACTTACACTTATAAAGCAGGAAATTGAAAAAGAGGAAGAAAATCTTCAGGTTGTTTTAAGGCAGATGTCTAAACATAAAACCG
Seq A exon
GAGAAACTGGAGTTAGAGAATTTGCAGCAGATATCCCAGCAGCAGAAAGGGGAAATAGAGTGGCAGAAGCAGCTCCTTGAGAGGGATAAACGAGAAATAGAACGAATGACTGCTGAGTCCCGAGCTTTACAATCGTGTGTTGAGTGTTTGAGCAAAGAAAAGGAAGATCTCCAAGAGAAATGTGACATTTGGGAAAAAAAGTTGGCACAAACCAAAAG
Seq C2 exon
GGTTTTAGCAGCAGCAGAAGAAAATAGCAAAATGGAGCAATCAAACTTAGAAAAGTTGGAATTGAATGTCAGAAAACTGCAGCAGGAACTAGACCAACTAAACAGAGACAAGTTGTCACTGCATAACGACATTTCAGCAATGCAACAGCAGCTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119397_MULTIEX3-3/10=C1-4
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.014 C2=0.450
Domain overlap (PFAM):
C1:
PF140101=PEPcase_2=FE(50.0=100)
A:
NO
C2:
NO
Main Skipping Isoform:
ENST00000373855fB1565
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCTGGAAGAACTGAGTTTTCAGA
R:
GAGCTGCTGTTGCATTGCTGA
Band lengths:
303-521
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development