RnoEX6016581 @ rn6
Exon Skipping
Gene
ENSRNOG00000022015 | Cntrl
Description
centriolin [Source:RGD Symbol;Acc:1305317]
Coordinates
chr3:14357274-14361069:+
Coord C1 exon
chr3:14357274-14357389
Coord A exon
chr3:14357470-14357687
Coord C2 exon
chr3:14360912-14361069
Length
218 bp
Sequences
Splice sites
3' ss Seq
GTCTCTTTTCTCTGCCTCAGGGG
3' ss Score
10.36
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
AACTAAAGAATGTTGCAGACATACTGCAGCTTGAAACCAACGAGCTACAAAGTCTGAAGCTACAGCATGACCAGAAGGTGGTGGAGCTGGAGAAGACTCAGGTCGACCTGCTGGAG
Seq A exon
GGGAAGCTAGAGCTAGAGAGTTTGCAGCAGACAGCTCAGCAGCAGAGACGGGAGCTAGAGCGGCAGAGACAACTCCTGGAGAGAGACAGGCGGGAGACAGAGCGAGTGAGGGCTGAGACCCAGGCACTACAGTCCTGCATCGAATGTCTGAATAAAGAAAAGGAACATCTCCAAGAGCAGTGCGAGAGTTGGGAAAAGAAGTCTTCCCACGCCAAAAG
Seq C2 exon
AGTTTTAGCAGCTACCGAGGAAAGCAACAACACGGAGCAGTCCAAGCTGGGGCAGCTGGAAGTGAGCGTCAGGAAGCTGCAGCAGGAGCTGGAGCTCCTGAGCCAAGACAAGCTCGCCCTACACAGTGATAGCGCCCAGGAGCAACAGCAGCTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022015-'46-64,'46-61,47-64=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.260 C2=0.685
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTAAAGAATGTTGCAGACATACTG
R:
CAGCTGCTGTTGCTCCTGG
Band lengths:
269-487
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]