GgaEX1016171 @ galGal4
Exon Skipping
Gene
ENSGALG00000001513 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr17:8369152-8372771:+
Coord C1 exon
chr17:8369152-8369267
Coord A exon
chr17:8369489-8369706
Coord C2 exon
chr17:8372546-8372771
Length
218 bp
Sequences
Splice sites
3' ss Seq
TCACAATTTTTCTTTCCCAGGAG
3' ss Score
9.42
5' ss Seq
AAGGTGGGA
5' ss Score
6.03
Exon sequences
Seq C1 exon
AACTGAAACATGTTCTGGAAATGTTGGAGATAGAAAATAATGAACTTCAGGGTTTGAAACTACAACATAATCAAAAGGTCAATGAACTAGAGAAGACTCAGGTTGCAGTTCTAGAA
Seq A exon
GAGAAGTTAAAATTGGAGAATATTCAGAGATTATTTCATTGTCAGCAAGGGGAAGTAGACTGGCAGGAACAACTACTTCAGAAGGACCGCCAGGAAAATGAACATCTGGTTTCTCAAATGCGCACTCTGCAAAATAATATTGAGTCTCTGAATAAGGAAAAGCAAAAGCTTGAAGAGGACTGTCAGAGTTTGGAAAAGAAGCTGTCACAAACCAGAAG
Seq C2 exon
ATCCTTTGTAACCTCAAGCAAAATTCAGAACACGAAGGGAAAAAACTGGAAGAAAATACTGCTAAACTCAAAGAACAGAAACTGCTTTTGGAAAAGGAACTCATGGATCAACGTGAGAAACTGGAACAGGCAGTAGCAAAAGTAAGGCTGACAGAAGAAAACAACAGGAAGCTGGAAAAAGAAGCATCTCAATTTGCAGCACTTGAAGAAACTATCAGAAAAAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001513_MULTIEX2-1/5=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.051 A=0.281 C2=0.447
Domain overlap (PFAM):
C1:
NO
A:
PF127182=Tropomyosin_1=PU(45.3=65.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGTTCTGGAAATGTTGGAGA
R:
TGCTTCTTTTTCCAGCTTCCTGT
Band lengths:
295-513
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]