BtaEX6036298 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011417 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr8:112481088-112485113:+
Coord C1 exon
chr8:112481088-112481203
Coord A exon
chr8:112481284-112481501
Coord C2 exon
chr8:112484956-112485113
Length
218 bp
Sequences
Splice sites
3' ss Seq
TCCTCTTTTCTCTTCTTTAGGAG
3' ss Score
12.25
5' ss Seq
ACGGTGAGA
5' ss Score
8.94
Exon sequences
Seq C1 exon
AACTTAAGAATATTCTGGACATGTTGCAACTTGAAAACAATGAGCTGCAAGCTTTGAAGCTACAGCATGAGCAAAAGATGTCTGAGTTAGAGAAGACTCAGGTTGACGTGCTGGAG
Seq A exon
GAGAAACTGCAGTTGGAGAATTTGCAGCAGACAGCCCTGCGACAGAAAGGGGAGATGGAGTGGCAGAAGCAGGTCTTAGAGAGGGACAAGCGCGAGACTGAGCGGGTAACTGCTGAGGCCCGAGCGTCGCGGCTGTGTGTTGAATCTTTGTGCAAACAAAAGGAAGATCTCGAGGAGAAATGTGACAGCTGGGAGAGGAAGCTGGCACAGACCAAACG
Seq C2 exon
GGTCTTAGCAGCCACAGAAGAGAATAGCAAAGCAAAGCAGTCAGACTTAGAAAAGTTGGAATTGGATATCAGAAAACTGGAACAGGAGCTAGACCAGCTAAACAGAAGCAAAGTCTCCCTGCACAGAGACGTCACGGCCGTGCAGCAGCAGCTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011417-'42-51,'42-50,43-51=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.103 A=0.082 C2=0.241
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTAAGAATATTCTGGACATGTTGC
R:
CCGTGACGTCTCTGTGCAG
Band lengths:
252-470
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]