DreEX6014127 @ danRer10
Exon Skipping
Gene
ENSDARG00000088492 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr5:62717617-62719433:-
Coord C1 exon
chr5:62719318-62719433
Coord A exon
chr5:62719026-62719234
Coord C2 exon
chr5:62717617-62717774
Length
209 bp
Sequences
Splice sites
3' ss Seq
CATGAGTGTCCACTTCTCAGGTG
3' ss Score
5.33
5' ss Seq
GAGGTACTG
5' ss Score
7.67
Exon sequences
Seq C1 exon
AGCTGGCACGCATGTTGGAAATGATCCAGCTGGAAACTGGAGAATTAGAGGATGTGAAGCTTCAATGTAACCAGAAACTGGAGCAACTAGAGAAGAGCCAGGAAACTCTTCTGCAG
Seq A exon
GTGCGTGTGGAACTGCAGTGTGTGCAGCAGGAGCTTCAGGAGCAGCGTGAAGAGGCTGAGAGACAGATGGAGAAAGACAGAGTAGAGCTGCACTCGCTCCAGCAGAAGAGCCTCCACCTGCAACAGCAAACAGAGGCAGCAGTTCAAGAGAGGAGCAGCCTGCAGGAACAGTGCCGAAACCTGGAGGCCAGACGCACACATGCTCAGAG
Seq C2 exon
GTGTTTGGAAGCAGCAGAGACGAGGACGAGTGAAGCAGAAACTGAGCTTCTTAGAGTGCAGGCAGAGCTGAACAAACTACAGCAGGAGCTAAAACAAACACAAGACCTGCATCTGGAGATCAGCAGAGACAATGTTGCCGTGCAAAAGCGGCATGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000088492-'39-43,'39-42,40-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.464 C2=0.447
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGCACGCATGTTGGAAAT
R:
TTGCACGGCAACATTGTCTCT
Band lengths:
260-469
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]