MmuEX6100809 @ mm10
Exon Skipping
Gene
ENSMUSG00000057110 | Cntrl
Description
centriolin [Source:MGI Symbol;Acc:MGI:1889576]
Coordinates
chr2:35165447-35167888:+
Coord C1 exon
chr2:35165447-35165562
Coord A exon
chr2:35165648-35165865
Coord C2 exon
chr2:35167731-35167888
Length
218 bp
Sequences
Splice sites
3' ss Seq
GAATCTTCTCTCTCACTCAGGAG
3' ss Score
7.44
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
AACTAAAGAATGTTGCAGACATACTGCAGCTTGAAACCAGCGAGCTCCAAGGTCTGAAGCTCCAGCATGACCAGAAGGTGGTGGAGCTGGAGAAGGCGCAGGTGGACGTGCTGGAG
Seq A exon
GAGAAACTAGAGCTGGAGAATTTGCAGCAGGCAACGCAGCAGCAGAGAAGGGAGCTAGAGCGGCAGAGACAGCTCCTGGAGAGAGACAGGCGGGAGACAGAGCGAGTGAGGGCAGAGAGCCAGGCCCTGCAGTCCTGCGTCGAATGTCTGAGTAAAGAAAAGGAGGATCTCCAAGGACAGTGCGAGAGCTGGGAAAAGAAGTCTTCCCACGCCCAAAG
Seq C2 exon
AGTTCTAGCAGCCACAGAAGAAAGCAACAAAATGGAGCAGTCCAACCTTGGGAAGTTGGAACTGAGTGTCAGAAAGCTGCGGCAGGAGCTGGAGCAGCTGAGCCAAGACAAGCTTGCCCTACACAGTGAGGTAGCCGAGGTGCAGCAGCAGCTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057110-'67-79,'67-75,69-79
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.233 C2=0.370
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTAAAGAATGTTGCAGACATACTG
R:
CTGCACCTCGGCTACCTCA
Band lengths:
260-478
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types