GgaEX1016171 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr17:9073808-9074912:+
Coord C1 exon
chr17:9073808-9073923
Coord A exon
chr17:9074145-9074362
Coord C2 exon
chr17:9074755-9074912
Length
218 bp
Sequences
Splice sites
3' ss Seq
TCACAATTTTTCTTTCCCAGGAG
3' ss Score
9.42
5' ss Seq
AAGGTGGGA
5' ss Score
6.03
Exon sequences
Seq C1 exon
AACTGAAACATGTTCTGGAAATGTTGGAGATAGAAAATAATGAACTTCAGGGTTTGAAACTACAACATAATCAAAAGGTCAATGAACTAGAGAAGACTCAGGTTGCAGTTCTAGAA
Seq A exon
GAGAAGTTAAAATTGGAGAATATTCAGAGATTATTTCATTGTCAGCAAGGGGAAGTAGACTGGCAGGAACAACTACTTCAGAAGGACCGCCAGGAAAATGAACATCTGGTTTCTCAAATGCGCACTCTGCAAAATAATATTGAGTCTCTGAATAAGGAAAAGCAAAAGCTTGAAGAGGACTGTCAGAGTTTGGAAAAGAAGCTGTCACAAACCAGAAG
Seq C2 exon
AGACTTGACTGCTACTGAAGACAGCATCAAAACTGCGTTGTCCAATGTAGAAAAAAGGGAATTGGATATTAAAAACCTGCAGCAGGAGATAGATGTACTGAATAAACAAAAAAAGTCACTGCATGGAGACATCACTGTTGTACAAAAAGATCTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001513-'16-16,'16-15,17-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.051 A=0.342 C2=0.259
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGAAACATGTTCTGGAAATGTTGG
R:
AGATCTTTTTGTACAACAGTGATGT
Band lengths:
268-486
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]