HsaEX0014651 @ hg38
Exon Skipping
Gene
ENSG00000119397 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr9:121160143-121161971:+
Coord C1 exon
chr9:121160143-121160302
Coord A exon
chr9:121161283-121161625
Coord C2 exon
chr9:121161856-121161971
Length
343 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTGTATTTTCCAGCTT
3' ss Score
10.59
5' ss Seq
CAGGTGCGT
5' ss Score
9.73
Exon sequences
Seq C1 exon
GAAGTAAAATCTCTTCTGGAAGAACTGAGTTTTCAGAAAGGAGAACTAAATGTTCAGATTAGTGAAAGAAAAACTCAACTTACACTTATAAAGCAGGAAATTGAAAAAGAGGAAGAAAATCTTCAGGTTGTTTTAAGGCAGATGTCTAAACATAAAACCG
Seq A exon
CTTTTCTACAGTAAGCAAGTATCTCTATGATCAGAAAAAAAGTTAATATTTAAATATCTGTATTTCAAAGGCCAAAAAATTGTTATATAAATCTCAGTCTGTATTTCAAAGTATTTTTAATTTATTTTGATCAATTTTATATAAAATGCTTTTAGTTGATTCTTTTATGTAGAAGCAAATGCTTTGGAACCAGATCTTTGTTAATTAAATGTTTTTGTTAAAATGTTTGTCTGTTTATTTATTTATATAGAGATGGGATCTTGCTCTGTCAACCAGGCTAGTCTCAAACCCCTGGGCTCAAGCAGTCCTTACACCTCAGCCTGCCAAATGGCTGGGATTACAG
Seq C2 exon
AACTAAAGAATATTCTGGACATGTTGCAACTTGAAAACCATGAGCTACAAGGTTTGAAGCTACAACATGACCAAAGGGTATCTGAATTAGAGAAGACTCAGGTGGCAGTGCTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119397_MULTIEX3-1/10=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF140101=PEPcase_2=FE(50.0=100)
A:
PF140101=PEPcase_2=PD(0.9=20.0)
C2:
NO
Main Inclusion Isoform:
ENST00000373855fB1565
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATCTCTTCTGGAAGAACTGAGT
R:
CTCTAGCACTGCCACCTGAGT
Band lengths:
270-613
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development