HsaEX0014651 @ hg19
Exon Skipping
Gene
ENSG00000119397 | CEP110
Description
centriolin [Source:HGNC Symbol;Acc:1858]
Coordinates
chr9:123922421-123924249:+
Coord C1 exon
chr9:123922421-123922580
Coord A exon
chr9:123923811-123923903
Coord C2 exon
chr9:123924134-123924249
Length
93 bp
Sequences
Splice sites
3' ss Seq
CTGTTTATTTATTTATATAGAGA
3' ss Score
6.03
5' ss Seq
CAGGTGCGT
5' ss Score
9.73
Exon sequences
Seq C1 exon
GAAGTAAAATCTCTTCTGGAAGAACTGAGTTTTCAGAAAGGAGAACTAAATGTTCAGATTAGTGAAAGAAAAACTCAACTTACACTTATAAAGCAGGAAATTGAAAAAGAGGAAGAAAATCTTCAGGTTGTTTTAAGGCAGATGTCTAAACATAAAACCG
Seq A exon
AGATGGGATCTTGCTCTGTCAACCAGGCTAGTCTCAAACCCCTGGGCTCAAGCAGTCCTTACACCTCAGCCTGCCAAATGGCTGGGATTACAG
Seq C2 exon
AACTAAAGAATATTCTGGACATGTTGCAACTTGAAAACCATGAGCTACAAGGTTTGAAGCTACAACATGACCAAAGGGTATCTGAATTAGAGAAGACTCAGGTGGCAGTGCTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119397-'48-44,'48-43,50-44
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.007 A=0.406 C2=0.003
Domain overlap (PFAM):
C1:
PF140101=PEPcase_2=FE(50.0=100)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGGAAATTGAAAAAGAGGAAGA
R:
TAGCACTGCCACCTGAGTCTT
Band lengths:
182-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)