HsaEX0014660 @ hg19
Exon Skipping
Gene
ENSG00000119397 | CEP110
Description
centriolin [Source:HGNC Symbol;Acc:1858]
Coordinates
chr9:123922421-123929955:+
Coord C1 exon
chr9:123922421-123922580
Coord A exon
chr9:123928385-123928458
Coord C2 exon
chr9:123929767-123929955
Length
74 bp
Sequences
Splice sites
3' ss Seq
TGAGAATGTCATTTCTTTAGAAA
3' ss Score
4.99
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GAAGTAAAATCTCTTCTGGAAGAACTGAGTTTTCAGAAAGGAGAACTAAATGTTCAGATTAGTGAAAGAAAAACTCAACTTACACTTATAAAGCAGGAAATTGAAAAAGAGGAAGAAAATCTTCAGGTTGTTTTAAGGCAGATGTCTAAACATAAAACCG
Seq A exon
AAAAACGAGAAGCAGTAAACTCACTGCAGGAGGAACTAGCTAATGTCCAAGACCATTTGAACCTAGCAAAACAG
Seq C2 exon
GACCTGCTTCACACCACCAAGCATCAGGATGTGTTGCTCAGTGAGCAGACCCGACTCCAGAAGGACATCAGTGAATGGGCAAATAGGTTTGAAGACTGTCAGAAAGAAGAGGAGACAAAACAACAACAACTTCAAGTGCTTCAGAATGAGATTGAAGAAAACAAGCTCAAACTAGTCCAACAAGAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119397_MULTIEX1-4/4=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.007 A=0.476 C2=0.122
Domain overlap (PFAM):
C1:
PF140101=PEPcase_2=FE(50.0=100)
A:
NO
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCTGGAAGAACTGAGTTTTCAGA
R:
CCTGATGCTTGGTGGTGTGAA
Band lengths:
177-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)