BtaEX6036296 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011417 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr8:112484956-112487462:+
Coord C1 exon
chr8:112484956-112485113
Coord A exon
chr8:112486177-112486250
Coord C2 exon
chr8:112487274-112487462
Length
74 bp
Sequences
Splice sites
3' ss Seq
TGTAAATGTTATTTCTGTAGAAA
3' ss Score
7.32
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GGTCTTAGCAGCCACAGAAGAGAATAGCAAAGCAAAGCAGTCAGACTTAGAAAAGTTGGAATTGGATATCAGAAAACTGGAACAGGAGCTAGACCAGCTAAACAGAAGCAAAGTCTCCCTGCACAGAGACGTCACGGCCGTGCAGCAGCAGCTCAAAG
Seq A exon
AAAAACGAGAAGCAGTAAACTCATTACAGGAGGAACTAGCTGATGTCCAAGACCATTTGAACCTAGCGAAACAG
Seq C2 exon
GACCTGCTCCACACCACCAAGCGCCAGGATGTCCTGCTTGGCGAGCAGACCAGGCTGCAGGAGGACCTCCAGGAACGCAGAAAGAAGTTGGAAGTCTGCCAAAGAGAAGAGGCAACAAAGCGGCAGCACCTGCAAGCGCTTCAGACGGAGGTGGAGGCGAAGGAGGCCGAGCTGGCCCGGCAGGACACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011417-'44-55,'44-54,46-55=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.241 A=0.320 C2=0.476
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCAAAGTCTCCCTGCACAG
R:
CCGCTTTGTTGCCTCTTCTCT
Band lengths:
176-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]