MmuEX6100808 @ mm10
Exon Skipping
Gene
ENSMUSG00000057110 | Cntrl
Description
centriolin [Source:MGI Symbol;Acc:MGI:1889576]
Coordinates
chr2:35167731-35170647:+
Coord C1 exon
chr2:35167731-35167888
Coord A exon
chr2:35169271-35169315
Coord C2 exon
chr2:35170459-35170647
Length
45 bp
Sequences
Splice sites
3' ss Seq
AAGCCATAAACTCTCTGCAGGAG
3' ss Score
4.39
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
AGTTCTAGCAGCCACAGAAGAAAGCAACAAAATGGAGCAGTCCAACCTTGGGAAGTTGGAACTGAGTGTCAGAAAGCTGCGGCAGGAGCTGGAGCAGCTGAGCCAAGACAAGCTTGCCCTACACAGTGAGGTAGCCGAGGTGCAGCAGCAGCTACAAG
Seq A exon
GAGGAACTGGATAGCACCCAAGACCATTTGGACCTAGCAAAGCAG
Seq C2 exon
GACCTGATCCACACCACCAAGTGCCAGAACGAGTTGCTCAATGAGCAGACGCAGCTGCAGGAGGACATCAGCAAATGGATGGCCAGGTTAGAGAGCTGCCAGAAAGAGACGGAGACAAAGGAACAGCAAGTCCAGCAGCTCCAGGATGAGATCAGAGAGAGCAAGCTCCGGCTGGACCAGCAGGAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057110-'71-85,'71-84,72-85
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.370 A=0.840 C2=0.317
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF087025=Fib_alpha=PU(51.8=93.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGCTTGCCCTACACAGTG
R:
CCTGGCCATCCATTTGCTGAT
Band lengths:
138-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types