GgaEX0001732 @ galGal4
Exon Skipping
Gene
ENSGALG00000001513 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr17:8370099-8371679:+
Coord C1 exon
chr17:8370099-8370256
Coord A exon
chr17:8370842-8370915
Coord C2 exon
chr17:8371491-8371679
Length
74 bp
Sequences
Splice sites
3' ss Seq
TTCACCAACTATTTTTCTAGAAA
3' ss Score
6.58
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
AGACTTGACTGCTACTGAAGACAGCATCAAAACTGCGTTGTCCAATGTAGAAAAAAGGGAATTGGATATTAAAAACCTGCAGCAGGAGATAGATGTACTGAATAAACAAAAAAAGTCACTGCATGGAGACATCACTGTTGTACAAAAAGATCTTCAAG
Seq A exon
AAAAAAAGAATGAACTAGAGATGCTGAAAGGAGAATTAAGTGAGTCCAGGCAGCAGCTTCAGCTGGCAGAACAG
Seq C2 exon
AATTTGAAAGATAATACAAAGCACCAGGAAGAGCTGCTTAGAGAGCAGGCAACCCTGAAAGAAGATATCCTAAAATGTGTAAGAAAATGTAAAGATTGCCAAGAGAGACAGAAAAAGAGAGAGAACCATTTGCAGCAGCTCCAGAAAGAGATTGAAGAGAAAGAAACAATATTGGCCAAACAAGAAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001513_MULTIEX2-4/5=2-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.194 A=0.600 C2=0.333
Domain overlap (PFAM):
C1:
PF127182=Tropomyosin_1=FE(50.0=100)
A:
NO
C2:
NO
Main Skipping Isoform:
ENSGALT00000002299fB6300
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCAAAACTGCGTTGTCCA
R:
CAGCTCTTCCTGGTGCTTTGT
Band lengths:
171-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]