GgaINT0126683 @ galGal4
Intron Retention
Gene
ENSGALG00000001513 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr17:8370099-8370915:+
Coord C1 exon
chr17:8370099-8370256
Coord A exon
chr17:8370257-8370841
Coord C2 exon
chr17:8370842-8370915
Length
585 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
TTCACCAACTATTTTTCTAGAAA
3' ss Score
6.58
Exon sequences
Seq C1 exon
AGACTTGACTGCTACTGAAGACAGCATCAAAACTGCGTTGTCCAATGTAGAAAAAAGGGAATTGGATATTAAAAACCTGCAGCAGGAGATAGATGTACTGAATAAACAAAAAAAGTCACTGCATGGAGACATCACTGTTGTACAAAAAGATCTTCAAG
Seq A exon
GTAAAGATGAAAGTGCAGTTTTTAAGCTAGTTTAAAAGAAATTACGTTGAAAGATGTAGTTTATGTAACAATTATATGATGTTACCAGCATGCTCAAATATTTACCAGCAGAGAAAATATTTAATGTGTCAAGATAGAAACTTTTCTGTGTTTGTTCATACATAGAAGCTTTAGCTGTACAGTTATTTCACTGATTGCTGACTGTATGGGAACTGTTGAGTCCCAGCCTGAACCTGGTGGAGCACTTGGGGAAAGACCTGGTCAGCCTTGGGAGCACAAGTGAAGGCAATTCACCTCTGTGACAGGAAGGGGTTGGAGCCTGACTGCACCTCTCTTAGGCCTCATTTAAGGGCTGACTGCCACTAGGGAAAGGTCTCTTTCTGGAGATCCCTCCTTGGTGAAGCTTTCCCTGCAAACCTAGAGTCTTCTGATATGGGTGAGCAACCTTCTTCCCTTCCTTTGTAGCACCTTTCTATTGTGCTGGTCCTTCTGTCATCGCATCTGTGTTGTATCGCCTTTCCCATTGTATTGATCTGTTCAATTGCTACATAGATTGAAAATGTCTTTCACCAACTATTTTTCTAG
Seq C2 exon
AAAAAAAGAATGAACTAGAGATGCTGAAAGGAGAATTAAGTGAGTCCAGGCAGCAGCTTCAGCTGGCAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001513:ENSGALT00000002299:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.194 A=NA C2=0.600
Domain overlap (PFAM):
C1:
PF127182=Tropomyosin_1=FE(50.0=100)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTGACTGCTACTGAAGACAGC
R:
CTGTTCTGCCAGCTGAAGC
Band lengths:
230-815
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]