BtaINT0040488 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011417 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr8:112484956-112486250:+
Coord C1 exon
chr8:112484956-112485113
Coord A exon
chr8:112485114-112486176
Coord C2 exon
chr8:112486177-112486250
Length
1063 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TGTAAATGTTATTTCTGTAGAAA
3' ss Score
7.32
Exon sequences
Seq C1 exon
GGTCTTAGCAGCCACAGAAGAGAATAGCAAAGCAAAGCAGTCAGACTTAGAAAAGTTGGAATTGGATATCAGAAAACTGGAACAGGAGCTAGACCAGCTAAACAGAAGCAAAGTCTCCCTGCACAGAGACGTCACGGCCGTGCAGCAGCAGCTCAAAG
Seq A exon
GTAAGAGAGGGCGCGGCGGGGGCGGCCGTCCTCCTTCTGCTGGAGTCTTGTTTAATGGTTTGCTTTCTTAGTACAGAAACAGAAGTGAGAAATTGTCCTAATACTAGGTATGGTGATGGTTGAGCAACTCTGAATTTAGCAAAAGCTGTGAAATTGCATACTTTAAATGGGTGAAATGCATTATATGTGAATTATATCTCAATAAAGCTGGCTTTTTTTTTTTTTTAATGAATTCATATTCCTTAGAGAACAATTTTAAAAACATAGCAAAGTGACAAAAATCACTATTGACCACACTCTTCAGAGATAATTTCTACTAGCAATGTGGTAAATATCCTTCCAGATTTTTCCTTGAGGGGTGGTGTGTGTGTATAGATTTAAAAACAAAAATGGAAGTGACGTATTTATGACCAAATCTTTATGAATCTGCGTGATCGTTTACTTATAAGTTACTAAGTAATTCCAGCCAACAGTATACTTGTTGAACACTTCCTGTGTACTGGGCATGATTGTAGATGTTTCCTATGCATTTTATCGTTTAATTCTTATAACATTTTTATGAGGTAGAAACTATTGTTTCACCCATTTAAAGAAGCCAACGTAAGCCTAGTTTCCTTGGGACTTGCTTGGTCTCACCCAGTTAGTAAGGGACAAAACCAGTACAGATAATAAAATTTACTTTCAAATTGTCTTCCTGAAGCGTTGTACCAAATTTACATTTTTATCAGCAGTGTGGAAGGCACCTGTTTTTAAACCACACACCTCATCAACAGTAGGTATTGTGTGTGAGTTTTTTTTTATCATGAGGTTTTGAACATGTTAATCTTTTTTTTTTTTTTAATATGTTAAGTCTTTAAAAAACATAAGGCTCCAAGCCCAGATCTGGCTTGCGCATGTACCTCTCTCTTGGCCTTGAATAAGGTAGGGTGGCATAGTCACCTGTTATACCCTAACAGAAGGAAGTATAAATTCACTTTCAGTCTACATTTTTAAGGGGACTGATGGGAAACTGGAAAATGTATACATATGTATTTCTTAGTCTATGTAAATGTTATTTCTGTAG
Seq C2 exon
AAAAACGAGAAGCAGTAAACTCATTACAGGAGGAACTAGCTGATGTCCAAGACCATTTGAACCTAGCGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011417:ENSBTAT00000061592:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.241 A=NA C2=0.320
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCTTAGCAGCCACAGAAGA
R:
TGTTTCGCTAGGTTCAAATGGTCT
Band lengths:
231-1294
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]