RnoINT0038576 @ rn6
Intron Retention
Gene
ENSRNOG00000022015 | Cntrl
Description
centriolin [Source:RGD Symbol;Acc:1305317]
Coordinates
chr3:14360912-14362271:+
Coord C1 exon
chr3:14360912-14361069
Coord A exon
chr3:14361070-14362197
Coord C2 exon
chr3:14362198-14362271
Length
1128 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
TTTTATGAATGTTTTGGTAGATA
3' ss Score
4.98
Exon sequences
Seq C1 exon
AGTTTTAGCAGCTACCGAGGAAAGCAACAACACGGAGCAGTCCAAGCTGGGGCAGCTGGAAGTGAGCGTCAGGAAGCTGCAGCAGGAGCTGGAGCTCCTGAGCCAAGACAAGCTCGCCCTACACAGTGATAGCGCCCAGGAGCAACAGCAGCTGCAAG
Seq A exon
GTGAGGAAGCTGTGACCTGCAGGCTGTGACTCCGCCCACAGCCTTGCCCTCAGGCGATGGGATTGGTGCAGAACGGGGCATGAGATTCCTTTATAAAATTAGATTATGGATTTAATCATACCACTCTGTGAACATACTAAGTCTAAATTGTACAGTTTAAGACACACATGGTACATGAATTTCATCTTAAGCTGGTCTTTTAAATCTAATTTTTATGTTTCTTAAGGAACAGTTTAAAAATAAAGCAAAAAAAAAAAAAGGTTAAATACAAATTATTTTGGGGCCAATGAGGTGGTTCAGTAGGTAAAAAGCACTTGTCACCAAGCATGACAACCTGAGTTCTGTTGTTCAAGGTCACAGTAAAGGGAGAGAACTGAGAACTGACGCCCAGATGTTGGCCTTCATCCTCCACACCCCTGCATGGCACAGGCTCACACTCACTCTCACTCACACACGCTCACACTCACACAAGTACACACTCACACAAGTACACACAGTAATTATGAATTGTCATCACCCTCAGGTCATAACTGTATGCGGGGGAGGGTGGAGAAGGCAATAGTAAAAATGTCTTCTATTACCATTATTTCTGATATTTATTTAGGATAAGTGGCTATGTATTTATAACTAATGGTGTGGGGTTCTAGCATTTATTATCTTCTAGTCAAGATGTATATACTGTCTCATTCAGTCTGTGCGACACAATAGACCTGGTGACACACCTATCATTCCAGCACTCAGTAGGCAGAGGTAGAAGAATGGAGTTCAGAGCTCACTGGGTTCATCATGAGACTGTCCAAAGGAAAACCTTCGCAGCATTTTTGACATAGACAGCAGTACTTTATCCATTTACAGATGGTGATATACATTGTCTTCATGAAAGAGTGTAGGATATACTCATTCTTAAACCATGCATCTCACCAACATGGTTAGCTAAATGTTTATGAGATCGTTAGTATAGGCATATTTTAACCCCACAGGGTTATACATATTCCTGTCTTTTAGCATCATTGCTCTAACAAAAATAAATGTAAACTCAGTTCTGATGTACTTTGAAGGGGGATCCAGTGTGTATACACAGATGCTGTATGTATACTTACAAAGATCATTTTATGAATGTTTTGGTAG
Seq C2 exon
ATAAACGGGAAGCCTTAAACTCCCTGCAGAAGGAACTGGAAAATACCCAAGACCATTTGAACCTAGCAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022015:ENSRNOT00000007776:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.685 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTTTAGCAGCTACCGAGGA
R:
TGCTTTGCTAGGTTCAAATGGTCT
Band lengths:
231-1359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]