MmuINT0034558 @ mm10
Intron Retention
Gene
ENSMUSG00000057110 | Cntrl
Description
centriolin [Source:MGI Symbol;Acc:MGI:1889576]
Coordinates
chr2:35167731-35169315:+
Coord C1 exon
chr2:35167731-35167888
Coord A exon
chr2:35167889-35169241
Coord C2 exon
chr2:35169242-35169315
Length
1353 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
TTATGAAAATGTTTTGGTAGGTA
3' ss Score
4.74
Exon sequences
Seq C1 exon
AGTTCTAGCAGCCACAGAAGAAAGCAACAAAATGGAGCAGTCCAACCTTGGGAAGTTGGAACTGAGTGTCAGAAAGCTGCGGCAGGAGCTGGAGCAGCTGAGCCAAGACAAGCTTGCCCTACACAGTGAGGTAGCCGAGGTGCAGCAGCAGCTACAAG
Seq A exon
GTAAGGAAGAGGCTGAACTGGAGGCCGGGCTCCACCCACAGACTTCCCTCCGCTGACGTGATTGGTGCAGAATGGTGTAAAATTAGATTATGGATTTAATTATAGCACTCTGTGAACATACTAAGTCTAAGTTGTACACGTTAAGACACACATGGTACATGAATTTCATCTTAAGCTGGCTTTTAAAATTTTAACTTATGTTTCTTAGGGAACAGTTTAAAAATAGAGCAAAAAAGGTTAAATTAATACAAATTACTTTTGGGCCAGTGAGGTGGTTCAGTAGGTAAAGAGCACTTGCCACCAAACCTGACAGGCTGAGTTCTGTCGTTCAAGAGCACACTAAAAGGAGAGACCTGGGAACTGACACCGAGATGTGGCCCTTCATCCTTCACACTGGTGCATGGCACATGTTCACACTCACTCCCACACACAGTACACACACTAATGAGCTGACATCACCCTCAGGTCATAACCGTGACTATGTATGTGGGGGGGGGGGGGGTTGAAGGCAATGGTAAAAATGTCTTTTATTACCAAATAATTTTTTAGGAGAAATGGCTAAGTATTTATAGCTAATGATGTATTTTTTTGAGCCTTTATTATGTTCTAGTCATGATGTATGTACTGTCTCATTTAATTCACATAACACCAATAGATCTGGTGACACACCAGTAACTCCAGCACTCAGTAGGAAAAGGCAGGAGAAACGCAAGTTCAAAGCTAACTGGGCCACATCATGAGACTGTATCAAAAATAAAAACTTCATAGCATTTTTGACATAGAACCAGTATTTCATCTATTTACAGATGGTGCTATTGGGGGTTTTCTTGCTATTTGCTCAAGATCACATAGTTAGTAATAGATAGCAATGCTGTCTATACATTGTCTTCATGAAAGAGTGTACCAAGTCTTACGTTTCCAGCAGCAATGTAGAATATACTTGTTTTGTTTTTTTGTTTGTTTGTTTTTTCAAGACAAGGTTTCTCTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATGCGCCACCACGCCCGGCCAAATATACTTGTTTTTAAACCATGCATCTCACCAACATTATTAGTTAAATGTTTATGAGATTCTTTAATATAGAAACCTTTTTAAATCCCACAAGGTTATATATATAACCTTGATGTCTTTTGGCATCATTGATTTAACAGAAACAAATGTAAATTCAGTTCCAATGTACTTTGAAGGGGGATCCAGTATGTAAACATATATGCTATATGTATACTTGCAAATAGCATTTTATGAAAATGTTTTGGTAG
Seq C2 exon
GTAAACAGGAAGCCATAAACTCTCTGCAGGAGGAACTGGATAGCACCCAAGACCATTTGGACCTAGCAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057110:ENSMUST00000156933:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.370 A=NA C2=0.840
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTCTAGCAGCCACAGAAGA
R:
TGCTTTGCTAGGTCCAAATGGT
Band lengths:
231-1584
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types