GgaINT0126683 @ galGal3
Intron Retention
Description
NA
Coordinates
chr17:9074755-9075571:+
Coord C1 exon
chr17:9074755-9074912
Coord A exon
chr17:9074913-9075497
Coord C2 exon
chr17:9075498-9075571
Length
585 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
TTCACCAACTATTTTTCTAGAAA
3' ss Score
6.58
Exon sequences
Seq C1 exon
AGACTTGACTGCTACTGAAGACAGCATCAAAACTGCGTTGTCCAATGTAGAAAAAAGGGAATTGGATATTAAAAACCTGCAGCAGGAGATAGATGTACTGAATAAACAAAAAAAGTCACTGCATGGAGACATCACTGTTGTACAAAAAGATCTTCAAG
Seq A exon
GTAAAGATGAAAGTGCAGTTTTTAAGCTAGTTTAAAAGAAATTACGTTGAAAGATGTAGTTTATGTAACAATTATATGATGTTACCAGCATGCTCAAATATTTACCAGCAGAGAAAATATTTAATGTGTCAAGATAGAAACTTTTCTGTGTTTGTTCATACATAGAAGCTTTAGCTGTACAGTTATTTCACTGATTGCTGACTGTATGGGAACTGTTGAGTCCCAGCCTGAACCTGGTGGAGCACTTGGGGAAAGACCTGGTCAGCCTTGGGAGCACAAGTGAAGGCAATTCACCTCTGTGACAGGAAGGGGTTGGAGCCTGACTGCACCTCTCTTAGGCCTCATTTAAGGGCTGACTGCCACTAGGGAAAGGTCTCTTTCTGGAGATCCCTCCTTGGTGAAGCTTTCCCTGCAAACCTAGAGTCTTCTGATATGGGTGAGCAACCTTCTTCCCTTCCTTTGTAGCACCTTTCTATTGTGCTGGTCCTTCTGTCATCGCATCTGTGTTGTATCGCCTTTCCCATTGTATTGATCTGTTCAATTGCTACATAGATTGAAAATGTCTTTCACCAACTATTTTTCTAG
Seq C2 exon
AAAAAAAGAATGAACTAGAGATGCTGAAAGGAGAATTAAGTGAGTCCAGGCAGCAGCTTCAGCTGGCAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001513:ENSGALT00000002299:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.259 A=NA C2=0.600
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTGACTGCTACTGAAGACAGC
R:
CTGTTCTGCCAGCTGAAGC
Band lengths:
230-815
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]