GgaEX0001732 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr17:9074755-9076335:+
Coord C1 exon
chr17:9074755-9074912
Coord A exon
chr17:9075498-9075571
Coord C2 exon
chr17:9076147-9076335
Length
74 bp
Sequences
Splice sites
3' ss Seq
TTCACCAACTATTTTTCTAGAAA
3' ss Score
6.58
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
AGACTTGACTGCTACTGAAGACAGCATCAAAACTGCGTTGTCCAATGTAGAAAAAAGGGAATTGGATATTAAAAACCTGCAGCAGGAGATAGATGTACTGAATAAACAAAAAAAGTCACTGCATGGAGACATCACTGTTGTACAAAAAGATCTTCAAG
Seq A exon
AAAAAAAGAATGAACTAGAGATGCTGAAAGGAGAATTAAGTGAGTCCAGGCAGCAGCTTCAGCTGGCAGAACAG
Seq C2 exon
AATTTGAAAGATAATACAAAGCACCAGGAAGAGCTGCTTAGAGAGCAGGCAACCCTGAAAGAAGATATCCTAAAATGTGTAAGAAAATGTAAAGATTGCCAAGAGAGACAGAAAAAGAGAGAGAACCATTTGCAGCAGCTCCAGAAAGAGATTGAAGAGAAAGAAACAATATTGGCCAAACAAGAAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001513_MULTIEX1-2/3=1-3
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.259 A=0.600 C2=0.333
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCAAAACTGCGTTGTCCA
R:
CAGCTCTTCCTGGTGCTTTGT
Band lengths:
171-245
Functional annotations
There are 0 annotated functions for this event