RnoEX6016580 @ rn6
Exon Skipping
Gene
ENSRNOG00000022015 | Cntrl
Description
centriolin [Source:RGD Symbol;Acc:1305317]
Coordinates
chr3:14360912-14363329:+
Coord C1 exon
chr3:14360912-14361069
Coord A exon
chr3:14362198-14362271
Coord C2 exon
chr3:14363141-14363329
Length
74 bp
Sequences
Splice sites
3' ss Seq
TTTTATGAATGTTTTGGTAGATA
3' ss Score
4.98
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
AGTTTTAGCAGCTACCGAGGAAAGCAACAACACGGAGCAGTCCAAGCTGGGGCAGCTGGAAGTGAGCGTCAGGAAGCTGCAGCAGGAGCTGGAGCTCCTGAGCCAAGACAAGCTCGCCCTACACAGTGATAGCGCCCAGGAGCAACAGCAGCTGCAAG
Seq A exon
ATAAACGGGAAGCCTTAAACTCCCTGCAGAAGGAACTGGAAAATACCCAAGACCATTTGAACCTAGCAAAGCAG
Seq C2 exon
GACCTGATGCACACCACCAAGTGCCAGAGTGCTCTGCTCAGTGAACAGGCACAGCTGCAGAAGGACGTCAGCCAATGGACTGCCCGGTTAGAGAGCTGCCAGAAAGAGACGGAGACAAAAGAGCAGCAACTTCAGGAGCTTCAGGATGAGATCAGAGAGAGCAAGCTCCAGCTAGACCAGCAGGAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022015-'48-68,'48-67,49-68=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.685 A=1.000 C2=0.222
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAACACGGAGCAGTCCAAG
R:
CCTGTTCACTGAGCAGAGCAC
Band lengths:
182-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]