MmuEX6100808 @ mm9
Exon Skipping
Gene
ENSMUSG00000057110 | Cep110
Description
centrosomal protein 110 [Source:MGI Symbol;Acc:MGI:1889576]
Coordinates
chr2:35023251-35026167:+
Coord C1 exon
chr2:35023251-35023408
Coord A exon
chr2:35024762-35024835
Coord C2 exon
chr2:35025979-35026167
Length
74 bp
Sequences
Splice sites
3' ss Seq
TTATGAAAATGTTTTGGTAGGTA
3' ss Score
4.74
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
AGTTCTAGCAGCCACAGAAGAAAGCAACAAAATGGAGCAGTCCAACCTTGGGAAGTTGGAACTGAGTGTCAGAAAGCTGCGGCAGGAGCTGGAGCAGCTGAGCCAAGACAAGCTTGCCCTACACAGTGAGGTAGCCGAGGTGCAGCAGCAGCTACAAG
Seq A exon
GTAAACAGGAAGCCATAAACTCTCTGCAGGAGGAACTGGATAGCACCCAAGACCATTTGGACCTAGCAAAGCAG
Seq C2 exon
GACCTGATCCACACCACCAAGTGCCAGAACGAGTTGCTCAATGAGCAGACGCAGCTGCAGGAGGACATCAGCAAATGGATGGCCAGGTTAGAGAGCTGCCAGAAAGAGACGGAGACAAAGGAACAGCAAGTCCAGCAGCTCCAGGATGAGATCAGAGAGAGCAAGCTCCGGCTGGACCAGCAGGAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057110-'54-57,'54-56,55-57=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.370 A=0.840 C2=0.317
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF087025=Fib_alpha=PU(51.8=93.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACACAGTGAGGTAGCCGAGG
R:
CTGCTGGACTTGCTGTTCCTT
Band lengths:
177-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: