DreEX0002915 @ danRer10
Exon Skipping
Gene
ENSDARG00000088492 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr5:62716800-62717774:-
Coord C1 exon
chr5:62717617-62717774
Coord A exon
chr5:62717461-62717525
Coord C2 exon
chr5:62716800-62716988
Length
65 bp
Sequences
Splice sites
3' ss Seq
TGATTGTTTGTAACCCACAGAGG
3' ss Score
7.25
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GTGTTTGGAAGCAGCAGAGACGAGGACGAGTGAAGCAGAAACTGAGCTTCTTAGAGTGCAGGCAGAGCTGAACAAACTACAGCAGGAGCTAAAACAAACACAAGACCTGCATCTGGAGATCAGCAGAGACAATGTTGCCGTGCAAAAGCGGCATGAGG
Seq A exon
AGGAACTGAGCAAACTCAAGAAACAGCTAGTGGACTCTCAGACTCTTGTAGATGAGGTTAGAGAG
Seq C2 exon
GAAGGGAAGTCTGCACGAAAGCAGTGGGAAGAGCTTGTGAAGAAACAAAAAGAGCTAAAGGCTGAGCTGAAGGAGAGAGAGGAGAAGATCAGGAGGAGACAACAAAAGATGGAGCGAATGGAGGAGCAGCTGCAGGAGCTCAAGGCGGAAATATCTGTGAAGCAGACACAGCTTGAAGACCATGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000088492-'41-46,'41-44,43-46
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.447 A=0.242 C2=0.300
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTGGAAGCAGCAGAGACGA
R:
GCTTTCGTGCAGACTTCCCTT
Band lengths:
178-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]