RnoALTA0010042-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000002302 | Corin
Description
corin, serine peptidase [Source:RGD Symbol;Acc:727887]
Coordinates
chr14:38402941-38413777:+
Coord C1 exon
chr14:38402941-38403054
Coord A exon
chr14:38413657-38413672
Coord C2 exon
chr14:38413673-38413777
Length
16 bp
Sequences
Splice sites
5' ss Seq
GCAGTAGGT
5' ss Score
4.53
3' ss Seq
CTCTGATGACACATCTGTAGCTT
3' ss Score
2.98
Exon sequences
Seq C1 exon
CGCTCTGTGGAGGAGGTGAGAGCTTCCTGTGTACCAGCGGGCTCTGCATCTCCAAGAAGCTGCAGTGTAACGGCTACAATGACTGTGATGACTGGAGCGACGAGGCTCACTGCA
Seq A exon
CTTCCCTTGTTTGCAG
Seq C2 exon
ACTGCAGCGAGGATCTGTTTCACTGTGGAACAGGCAAGTGCCTCCACCACAGCCTTGTGTGCGATGGGTATGATGACTGTGGGGACCTGAGCGACGAGCAAAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002302-15-9,15-8-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=97.4),PF0005713=Ldl_recept_a=PU(0.1=0.0)
A:
NA
C2:
PF0005713=Ldl_recept_a=WD(100=97.3),PF0005713=Ldl_recept_a=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCTCCAAGAAGCTGCAGT
R:
CACTTGCCTGTTCCACAGTGA
Band lengths:
109-125
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]