RnoALTD0007557-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000002302 | Corin
Description
corin, serine peptidase [Source:RGD Symbol;Acc:727887]
Coordinates
chr14:38402941-38413780:+
Coord C1 exon
chr14:38402941-38403054
Coord A exon
chr14:38403055-38403058
Coord C2 exon
chr14:38413673-38413780
Length
4 bp
Sequences
Splice sites
5' ss Seq
TAGGTGACA
5' ss Score
2.21
3' ss Seq
GTAGCTTCCCTTGTTTGCAGACT
3' ss Score
6.96
Exon sequences
Seq C1 exon
CGCTCTGTGGAGGAGGTGAGAGCTTCCTGTGTACCAGCGGGCTCTGCATCTCCAAGAAGCTGCAGTGTAACGGCTACAATGACTGTGATGACTGGAGCGACGAGGCTCACTGCA
Seq A exon
GTAG
Seq C2 exon
ACTGCAGCGAGGATCTGTTTCACTGTGGAACAGGCAAGTGCCTCCACCACAGCCTTGTGTGCGATGGGTATGATGACTGTGGGGACCTGAGCGACGAGCAAAACTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002302-15-9,16-9-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=97.4),PF0005713=Ldl_recept_a=PU(0.1=0.0)
A:
NA
C2:
PF0005713=Ldl_recept_a=WD(100=97.3),PF0005713=Ldl_recept_a=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCTCCAAGAAGCTGCAGT
R:
GTGAAACAGATCCTCGCTGCA
Band lengths:
92-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]