RnoALTA0010670-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000054172 | Ctnnb1
Description
catenin beta 1 [Source:RGD Symbol;Acc:70487]
Coordinates
chr8:129627274-129628378:+
Coord C1 exon
chr8:129627274-129627374
Coord A exon
NA
Coord C2 exon
chr8:129627786-129628378
Length
0 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
3' ss Seq
TCTGGTCCTTTTTGGTCGAGGAG
3' ss Score
3.62
Exon sequences
Seq C1 exon
TGCCTGACCTGGGACACGCCCAGGACCTCATGGACGGGCTGCCTCCAGGTGATAGCAATCAGCTGGCCTGGTTTGATACTGACCTGTAAATCGTCCTTTAG
Seq A exon
NA
Seq C2 exon
GAGTAACCATACAAATGGATTTGGGGAGTGACTCACGCAGTGAAGAATGCACACGAATGGATCACAAGATGGCGTTATCAAACCCTAGCCTTGCTTGTTCCTTTTTTTTTTTTTTTTTTTTAATATCTGTAATGGTACTGACTTTGCTTGCTTTGAAGTAGCTTTTATTTTTTGCAGTAACTGTTAGTTTTTAAGTCTCGTAGTGTTATGTTCTAGTGAACCTGCTACAGCAATTTCTGATTTCTAAGAACTGAGTAATGGTGTAGAACACTAATTCATAATCACGCTAATTGTAATCTGGAGACGTGTAACATTGTGTAGCCTTTTGTATAAATAGACAGATAGAAATGGTCCGATTAGTTTCCTTTTTAATATGCTTAAAATAAGCAGGTGGATCTATTTCATGTTTTTGAACAAGAACTTTATTGGGGATACGTGCGGTGGGGTAAATCAGTAAGAGGTGTTACTTGAGCCTTCTTGTTTTGGACAGTATACCAGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000054172-24-31,24-30-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACACGCCCAGGACCTCAT
R:
AAGCAAGCAAAGTCAGTACCA
Band lengths:
242-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]