RnoALTA0011000-2/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000033680 | Cyp2b1
Description
cytochrome P450, family 2, subfamily b, polypeptide 1 [Source:RGD Symbol;Acc:2466]
Coordinates
chr7:99174963-99175722:+
Coord C1 exon
chr7:99174963-99175139
Coord A exon
chr7:99175581-99175583
Coord C2 exon
chr7:99175584-99175722
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TCTCTCCCACCTGGAACCAGGAG
3' ss Score
5.89
Exon sequences
Seq C1 exon
GTGTTTGAGTTCTTCTCTGGGTTCCTGAAATACTTTCCTGGTGCCCACAGACAAATCTCCAAAAACCTCCAGGAAATCCTCGATTACATTGGCCATATTGTGGAGAAGCACAGGGCCACCTTAGACCCAAGCGCTCCACGAGACTTCATCGACACTTACCTTCTGCGCATGGAGAAG
Seq A exon
GAG
Seq C2 exon
AAGTCGAACCACCACACAGTGTTCCATCATGAGAACCTCATGATCTCCCTGCTCTCTCTCTTCTTTGCTGGCACTGAGACCAGCAGCACCACACTCCGCTATGGTTTCCTGCTGATGCTCAAGTACCCCCATGTCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033680-11-12,11-11,11-10-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(14.4=100)
A:
NA
C2:
PF0006717=p450=FE(9.9=100)
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACTTACCTTCTGCGCATGG
R:
GGTCTCAGTGCCAGCAAAGAA
Band lengths:
107-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]