RnoALTA0011092-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000055078 | Cyp4b1
Description
cytochrome P450, family 4, subfamily b, polypeptide 1 [Source:RGD Symbol;Acc:2480]
Coordinates
chr5:134514897-134515410:-
Coord C1 exon
chr5:134515286-134515410
Coord A exon
chr5:134515047-134515048
Coord C2 exon
chr5:134514897-134515046
Length
2 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGG
5' ss Score
7.2
3' ss Seq
CCCTCTGCCCTTCCATGTAGAGA
3' ss Score
9.65
Exon sequences
Seq C1 exon
GACAAGTGGGAGAAAAAGGCTAGTGAAAATAAGAGCTTTGACATCTTCTGTGACGTAGGCCACATGGCCCTGGACACCCTCATGAAGTGCACCTTCGGCAAAGGAGACAGCGGCCTAGGCCACAG
Seq A exon
AG
Seq C2 exon
ACAACAGCTACTACCTGGCGGTCAGTGACCTCACACTGCTGATGCAGCAGCGCATCGACTCCTTCCAGTACCATAATGACTTCATTTACTGGCTCACTCCACATGGCCGCCGCTTCCTGCGGGCCTGCAAGATAGCCCATGACCATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055078-8-6,8-5-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(9.0=100)
A:
NA
C2:
PF0006717=p450=FE(11.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGACACCCTCATGAAGTGC
R:
GCATCAGCAGTGTGAGGTCAC
Band lengths:
101-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]