RnoALTA0011621-1/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000046050 | Dennd1c
Description
DENN/MADD domain containing 1C [Source:MGI Symbol;Acc:MGI:1918035]
Coordinates
chr9:9981285-9981644:+
Coord C1 exon
chr9:9981285-9981352
Coord A exon
NA
Coord C2 exon
chr9:9981458-9981644
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
AGCCCCACCTTGAACTCCAGGGA
3' ss Score
3.93
Exon sequences
Seq C1 exon
AACAGGCCCCTCCGTCCTAGCAGGAGACTCAAGCCGGAAGGGGGACCTTCTGAACCCCTGCAGGAGAG
Seq A exon
NA
Seq C2 exon
GGACACTCAGAATCCCTGGGCAGAGGACACTCTAGACGGCAGCTTCCTGGGGTCTGGAGAGGAGCTGGATCTGCTGAGTGAGATCCTAGACAGTCTGAGTGTGGAAATCAAGAGTGGCGGCCAGCTGAGGGCCAGCCAGAGTCTGGACTGCTGTCAGCAAGGGGCCTCAGAGAGCTGTTCCAGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046050-31-44,31-43,31-42-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.743
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTAGCAGGAGACTCAAGCC
R:
AGGAAGCTGCCGTCTAGAGTG
Band lengths:
102-123
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]