RnoINT0046451 @ rn6
Intron Retention
Gene
ENSRNOG00000046050 | Dennd1c
Description
DENN/MADD domain containing 1C [Source:MGI Symbol;Acc:MGI:1918035]
Coordinates
chr9:9981285-9981644:+
Coord C1 exon
chr9:9981285-9981352
Coord A exon
chr9:9981353-9981436
Coord C2 exon
chr9:9981437-9981644
Length
84 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
GATGTCAACCCTCAATCCAGGAG
3' ss Score
4.85
Exon sequences
Seq C1 exon
AACAGGCCCCTCCGTCCTAGCAGGAGACTCAAGCCGGAAGGGGGACCTTCTGAACCCCTGCAGGAGAG
Seq A exon
GTAAGAATTTAAGCAGGGTCACAACTAATGAGGGGTGTCTTCTAGACTCTGGAGACAAAGCCCAGATGTCAACCCTCAATCCAG
Seq C2 exon
GAGCCCCACCTTGAACTCCAGGGACACTCAGAATCCCTGGGCAGAGGACACTCTAGACGGCAGCTTCCTGGGGTCTGGAGAGGAGCTGGATCTGCTGAGTGAGATCCTAGACAGTCTGAGTGTGGAAATCAAGAGTGGCGGCCAGCTGAGGGCCAGCCAGAGTCTGGACTGCTGTCAGCAAGGGGCCTCAGAGAGCTGTTCCAGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046050:ENSRNOT00000075215:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.743
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCTGAACCCCTGCAGGAGA
R:
CTGGCCGCCACTCTTGATTTC
Band lengths:
167-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]