RnoALTA0011810-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000017737 | Dgkz
Description
diacylglycerol kinase zeta [Source:RGD Symbol;Acc:70929]
Coordinates
chr3:80851421-80851846:-
Coord C1 exon
chr3:80851775-80851846
Coord A exon
chr3:80851513-80851516
Coord C2 exon
chr3:80851421-80851512
Length
4 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
AACGGCTCTCTGTCTCCCAGGAA
3' ss Score
9.34
Exon sequences
Seq C1 exon
AACACCCTCAAGGCCAGCAAGAAGAAAAAGAGAGCATCCTTCAAAAGGAGATCCAGTAAGAAAGGACCTGAG
Seq A exon
GAAG
Seq C2 exon
GCCGCTGGAGACCCTTCATCATCAGGCCCACCCCGTCCCCCCTCATGAAGCCCCTGCTAGTGTTTGTAAACCCCAAGAGTGGGGGTAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017737-28-31,28-30-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.792 A=NA C2=0.156
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0078119=DAGK_cat=PU(10.4=40.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCAAGGCCAGCAAGAAGAA
R:
GGGCCTGATGATGAAGGGTCT
Band lengths:
96-100
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]