GgaALTA1010646-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000008380 | DGKZ
Description
diacylglycerol kinase zeta [Source:RefSeq peptide;Acc:NP_001026363]
Coordinates
chr5:22965346-22965880:-
Coord C1 exon
chr5:22965809-22965880
Coord A exon
chr5:22965438-22965441
Coord C2 exon
chr5:22965346-22965437
Length
4 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
ACCTGTGGTGTCTCTTGCAGGAA
3' ss Score
12.99
Exon sequences
Seq C1 exon
AATCCAATGAAATCCAGTAAGAAAAAGAAGAGGACATCATTCAAGCGAAAATCCAGCAAAAAGGGTGCTGAG
Seq A exon
GAAG
Seq C2 exon
GGAGGTGGAAACCTTTTGTCATCAAGCCCATGCCAGCTCCTCTCATGAAGCCCTTGCTCGTGTTTGTGAACCCCAAGAGTGGTGGGAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008380-20-18,20-17-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.875 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0078119=DAGK_cat=PU(10.4=40.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGAAAATCCAGCAAAAAGGGT
R:
GGGGTTCACAAACACGAGCAA
Band lengths:
102-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]